LBT references

[BOC09] N. Bocquet, H. Nury, M. Baaden, C. Le Poupon, J.P. Changeux, M. Delarue and P.J. Corringer (2009) X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation, Nature 457, 111-114 -- F1000: Must Read

[CHA10] M. Chavent, A. Vanel, B. Lévy, B. Raffin, A. Tek, M. Baaden (2010) A Rendering Method for Small Molecules up to Macromolecular Systems: HyperBalls Accelerated by Graphics Processors, JOBIM 2010.

[CHA11a] M. Chavent, B. Lévy, M. Krone, K. Bidmon, J.P. Nominé, T. Ertl, M. Baaden (2011) GPU-powered tools boost molecular visualization, Brief Bioinform, doi: 10.1093/bib/bbq089.


[CHA11b] M. Chavent, A. Vanel, A. Tek, B. Lévy, S. Robert, B. Raffin, M. Baaden A GPU-accelerated atom and dynamic bond visualization using HyperBalls, a unified algorithm for balls, sticks and hyperboloids, submitted to J Comput Chem.


[DEL09] O. Delalande, N. Férey, G. Grasseau, M. Baaden (2009) Complex Molecular Assemblies at hand via Interactive Simulations, Journal of Computational Chemistry 30, 2375-2387

[DEL10] O. Delalande, N. Férey, B. Laurent, M. Guéroult, B. Hartmann, M. Baaden (2010) Multi-resolution and multi-physics approach for interactively locating functionally linked ion binding sites by steering small molecules into electrostatic potential maps using a haptic device, Pac. Symp. Biocomput., 205-15.

[FER08a] N. Férey, O. Delalande, G. Grasseau, M. Baaden (2008) A VR framework for interacting with molecular simulations, in Proceedings of the 2008 ACM symposium on Virtual reality software and technology, edited by E. Kruiff, pp. 91-94, ACM, Bordeaux, France.

[FER08b] N. Férey, O. Delalande, G. Grasseau, M. Baaden (2008) From Interactive to Immersive Molecular Dynamics, in Proceedings of the International Workshop on Virtual Reality and Physical Simulation (VRIPHYS'08), edited by F. Faure and M. Teschner, pp. 89-96, Eurographics, Grenoble, France.


[NUR10] H. Nury, F. Poitevin, C. Van Renterghem, J.P. Changeux, P.J. Corringer, M. Delarue, M. Baaden (2010) One-microsecond molecular dynamics simulation of channel gating in a nicotinic receptor homologue, PNAS 107, 6275-6280 -- F1000: Must Read

[NUR11] H. Nury, C. Van Renterghem, Y. Weng, A. Tran, M. Baaden, V. Dufresne, J.-P. Changeux, J. M. Sonner, M. Delarue and P.-J. Corringer (2011) X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel, Nature 469, 428–431 -- F1000: Must Read

[SAL10] A. Saladin, C. Amourda, P. Poulain, N. Férey, M. Baaden, M. Zacharias, O. Delalande, C. Prévost (2010) Modeling the Early Stage of DNA Sequence Recognition within RecA Nucleoprotein Filaments, Nucleic Acids Research 38, 6313-23.

[TEK10] A. Tek, B. Laurent, M. Chavent, M. Baaden (2010) Augmented Dynamics : Enhanced Visualization of Molecular Dynamics Trajectories, EMBO Workshop on Visualizing Biological Data, EMBL Heidelberg, Germany.


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