General References

[AGE10] Agerwala (2010) Exascale computing: the challenges and opportunities in the next decade. PPoPP '10: Proceedings of the 15th ACM SIGPLAN symposium on Principles and practice of parallel programming

[AVIESAN] http://www.aviesan.fr/fr/aviesan/accueil/menu-header/instituts-thematiques-multi-organismes/bases-moleculaires-et-structurales-du-vivant

[ALLISTENE] http://www.enseignementsup-recherche.gouv.fr/cid50054/allistene-l-alliance-des-sciences-et-technologies-du-numerique.html

 

[FOD10] http://nvac.pnl.gov/nsf.stm

 

[VIS10] http://www.vismaster.eu

[BAK00] Bak, Rasmussen and Nielsen (2000) SIMPSON: A general simulation program for solid-state NMR spectroscopy. J Magn Reson 147, 296-330

[BCC05] http://www.medinfonews.com/ar/1h.htm

[BEL09] Bell et al. (2009) Computer science. Beyond the data deluge. Science 323, 1297-8

[BLO09] J. N. Block et al (2009) KinImmerse: Macromolecular VR for NMR ensembles. Source code for biology and medicine 4, 3.

[BOH02] J. Bohannon (2002) Bioinformatics. The human genome in 3D, at your fingertips. Science 298, 737

[BRO08] D.H. Brouwer (2008) NMR crystallography of zeolites: Refinement of an NMR-solved crystal structure using ab initio calculations of 29Si chemical shift tensors, J Am Chem Soc 130, 6306-6307.

[CHI10] Childs et al. (2010) Extreme Scaling of Production Visualization Software on Diverse Architectures. Computer Graphics and Applications, IEEE 30, 22 – 31

[COLLAVIZ] http://www.collaviz.org/

[DES06] Desmeulles et al. (2006) The virtual reality applied to biology understanding: The in virtuo experimentation, Expert Systems with Applications, 30, 82-92.

[DOE07] U.S. department of energy (2007) Catalysis for energy. Report -- http://www.er.doe.gov/bes/reports/files/CAT_rpt.pdf

[EXA10] Wolf et Pieper (2010) Biology and Medical Research at the Exascale, SciDAC review – special issue (http://www.scidacreview.org/1001/html/biology.html).

[EXA11a] International Exascale Software Project (IESP) -- www.exascale.org

[EXA11b] Dongarra et al. (2011) The International Exascale Software Project roadmap. Int J High Perf Comput Applications 25, 3-60

[EESI] http://www.eesi-project.eu/

[FOX11] Fox et Hendler (2011) Changing the equation on scientific data visualization. Science 331, 705-8

[FRA03] Frank et al. (2003) Dynamic molecules: molecular dynamics for everyone. An internet-based access to molecular dynamic simulations: basic concepts. J Mol Model 9, 308-15

[HAA02] de Haan et Post (2002) Towards Intuitive Exploration Tools for Data Visualisation in VR. Proc. ACM VRST’02

[HAC08] Hachet, Decle, Knodel, Guitton (2008) Navidget for Easy 3D Camera Positioning from 2D Inputs, 3D User Interfaces.

[HED04] N. Hedin, R. Graf, S.C. Christiansen, C. Gervais, R.C. Hayward, J. Eckert and B.F. Chmelka (2004) Structure of a surfactant-templated silicate framework in the absence of 3D crystallinity, J. Am. Chem. Soc. 126, 9425-9432.

[KEI10] Keim et al. (2010) Solving Problems with Visual Analytics.

[KEYTECH] Key technologies for 2010, Report by the French Ministry for the Industry, November 2006. http://www.industrie.gouv.fr/liste_index/technocles2010.html

[KLO02] Klosowski et al. (2002) Deep view: high-resolution reality. Computer Graphics and Applications, IEEE 22, 12-15.

[KOL08] Kolatkar et al. (2008) C-ME: A 3D Community-Based, Real-Time Collaboration Tool for Scientific Research and Training. PLoS ONE 3, e1621. doi:10.1371/journal.pone.0001621

[MEGAMOL] MegaMol, a visualization middleware used to visualize point-based molecular datasets -- http://www.visus.uni-stuttgart.de/megamol

[MOR04] Moritz et Meyer (2004) Interactive 3D protein structure visualization using virtual reality. Fourth IEEE Symposium on Bioinformatics and Bioengineering (BIBE) 2004, 503 – 507

[MRINT10] https://dep-info.u-psud.fr/formation/lmd/M2R_Interaction

[NAM88] Namba et al. (1988) Enhancement and simplification of macromolecular images. Biophys J 53, 469-75

[ODO10] O'Donoghue et al. (2010) Visualizing biological data-now and in the future. Nat Methods 7, S2-4

[PAL89] Palmer et al. (1989) Interactive NMR and computer simulation studies of lanthionine-ring structures. Biopolymers 28, 397-408

[PANDA] http://www.pandastream.com/

[PIC01] Pickard et Mauri (2001) All-electron magnetic response with pseudopotentials: NMR chemical shifts, Phys Rev B 63, 245101

[ROB09] Robertson et al. (2009) Scale and complexity in visual analytics. Information Visualization 8, 247-253

[THI10] Thibodeau (2010) Supercomputer contest hits new level. Computerworld -- http://www.pcworld.com/article/211752/supercomputer_contest_hits_new_level.html

[VES06] Veshtort et Griffin (2006) SPINEVOLUTION: A powerful tool for the simulation of solid and liquid state NMR experiments. J Magn Reson 178, 248-282

[VISUS] http://www.visus.uni-stuttgart.de/index.php?L=1

[YAN05] Yang et al. (2005) Integration of metabolic networks and gene expression in virtual reality, Bioinformatics 21, 3645-3650

[YU10] Yu et al. (2010) In situ visualization for large-scale combustion simulations. IEEE Comput Graph Appl 30, 45-57

[WAR10] M. O. Ward, G Grinstein, D. A. Keim (2010). Interactive Data Visualization: Foundations, Techniques, and Applications (2010). ISBN: 978-1-56881-473-5, A. K. Peters Ltd.

 

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